Add MCP server support and fix memory tools user isolation ...

MCP integration:
- New navi/mcp/ package: client, manager, config, tools
- ToolRegistry learns register_external() for MCP tools
- reload_tools reconnects MCP servers on hot reload
- New built-in mcp_status tool
- Startup/shutdown wiring for MCP connections
- 12 new tests (unit + integration with real stdio server)

Memory tools fix:
- memory, memory_save, memory_search, memory_forget now read
  current_user_id from tool context and pass it to MemoryStore
- Fixes invisible facts for authenticated users

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Fix admin memory showing 0 facts; add pagination/search/sort ...

Bug fix:
- get_all_facts(user_id=None) was filtering for user_id IS NULL only,
  so admin panel showed 0 facts when facts had user_ids set.
- Added all_users parameter to get_all_facts and fact_count.
- Admin endpoint now passes all_users=True to return all facts.

Memory pagination:
- Extended get_all_facts with offset, search, sort_by, sort_order params.
- Extended fact_count with search and all_users params.
- /admin/memory endpoint now accepts limit, offset, search, sort_by,
  sort_order and returns {total, limit, offset, items}.

Admin panel frontend:
- Added server-side search with debounce for memory facts.
- Added sortable column headers (category, key, source, confidence, updated).
- Added pagination controls (prev/next, page size selector).
- Switched memory display from grouped tables to flat sortable table.

Tests:
- Added unit tests for get_all_facts(all_users=True) and
  fact_count(all_users=True).
- All 219 tests pass.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Add pagination, search, and sorting to admin sessions ...

Backend:
- Add count_all and search_list abstract methods to SessionStore
- Implement count_all and search_list in PgSessionStore (SQL with ILIKE)
- Implement count_all and search_list in InMemorySessionStore
- Update /admin/sessions to accept limit, offset, search, sort_by, sort_order
- Return {total, limit, offset, items} from /admin/sessions

Frontend:
- Add search input for sessions in admin panel
- Add clickable sortable column headers with asc/desc toggle
- Add pagination controls (prev/next, page size selector, item count)
- Debounce search input (300ms)

Tests:
- Add integration tests for pagination, offset, search, and sorting
- All 217 tests pass

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Fix memory system bugs: deterministic summary id, skip legacy extraction ...

- _summary.py: replace non-deterministic hash() with zlib.crc32 so
  summary id stays stable across server restarts, preventing duplicate
  summary rows.
- extractor.py: skip memory extraction for legacy sessions (user_id=None)
  — ON CONFLICT(user_id, category, key) does not catch NULL duplicates
  in PostgreSQL (NULL != NULL).
- sessions.py: _process_stale_sessions skips legacy sessions.
- _facts.py: remove dead code (user_clause/user_param variables).
- test_extractor.py: add user_id to test sessions + new test for
  legacy session skip.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Fix WebSocket 403 — bypass FastAPI Depends for WS auth ...

- websocket.py: resolve user by calling get_current_user_ws directly
  inside the handler instead of using Depends(). This avoids FastAPI
  returning HTTP 403 on the upgrade request when auth resolution fails.
- websocket.py: accept WebSocket before access check, close with 4003
  for auth failures instead of HTTP 403.
- auth/deps.py: remove debug logging from get_current_user_ws.
- tests/conftest.py: monkeypatch get_current_user_ws directly since
  Depends() is no longer used on the WebSocket endpoint.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Multi-user auth via gnexus-auth OAuth + hybrid role/permission model ...

- Integrate gnexus-auth-client-py (GAuthClient) for OAuth flow, token refresh,
  and webhook parsing
- Add navi/auth/ package: User model, Fernet encryptor, client singleton,
  deps (get_current_user, require_admin, require_permission)
- New tables: navi_users, user_auth_sessions (auto-created on startup)
- Session/memory isolation by user_id with legacy NULL support
- Cookie-based auth proxy: /auth/login, /callback, /logout, /me
- Webhook receiver /webhooks/gnexus-auth handling user events, global logout,
  session revocation, role/permission changes
- Admin endpoints (/admin/*) gated by role + permissions
- Webclient auth store with isAdmin/hasPermission guards
- Admin-only profile filtering in /agents/profiles
- 200/200 tests passing

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Allow subagents to use selected profiles

Paginate session list loading

Refine 3D modeler workflow

Disable thinking stalls for 3D subagents

Improve 3D modeling validation prompts

Add artifact source previews

Improve content publishing UX

Complete phase 7 regression test coverage

Add regression tests for content publishing and LLM timeouts

Add context provider registry all accessor

Align Ollama HTTP timeout with LLM timeouts

Clarify share file publishing boundaries

Add 62 tests across all planned phases + fix integration flakiness ...

- Phase 3: 19 API route integration tests (health, agents, sessions, messages)
- Phase 3: 7 WebSocket integration tests (connect, send, replay, invalid, stop)
- Phase 4: 9 agent tests (_check_context_size, _iter_stream_guarded)
- Phase 4: 5 planning tests (_parse_plan_steps)
- Phase 5: 22 tool tests (filesystem 13, code_exec 5, terminal 4)
- Fix flaky integration tests by patching module-level singletons
  (_session_store, _registries, _workers) instead of getter functions,
  because FastAPI Depends() captures the original function at import time.
- Update docs/testing.md coverage table (150 total tests)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Phase 2 — Memory store + extractor unit tests ...

- tests/conftest_factory.py: add FakeRecord, FakeConnection, FakePool, make_store_with_pool
- tests/unit/memory/test_store.py: 18 tests for upsert, vector/ILIKE search, delete, list, count, summary, session state, backfill
- tests/unit/memory/test_extractor.py: 11 tests for JSON extraction, invalid JSON, empty response, tool result truncation, summary regeneration
- docs/testing.md: update coverage status, add FakePool usage example

88 total tests passing (59 + 29).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Bootstrap test suite — Phase 1 unit tests ...

- docs/testing.md: testing strategy, mock strategy, phase breakdown
- tests/conftest.py: autouse fixture to reset navi.config.settings per test
- tests/conftest_factory.py: FakeLLMBackend, FakeTool, make_profile, make_registry helpers
- tests/unit/core/test_events.py: wire serialization for all 15 event dataclasses
- tests/unit/core/test_compressor.py: should_compress, partition_messages, format_for_summary, compress_context
- tests/unit/core/test_registry.py: ToolRegistry, ProfileRegistry, BackendRegistry
- tests/unit/core/test_context_builder.py: system prompt caching, persona injection, goal anchor, iteration budget
- tests/unit/profiles/test_base.py: Pydantic model coercion, defaults, extra fields
- navi/core/context_builder.py: use module-level `import navi.config` instead of `from navi.config import settings` so tests can swap the singleton

59 tests passing.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>