Comprehensive documentation update ...

- websocket.md: add heartbeat, session_sync, replay_start/end, planning_status,
  plan_ready (with is_subagent), stream_end extra fields, context_compressed summary,
  updated _AgentRun.events replay buffer, corrected reconnect section
- sessions.md: add name, planning_logs fields; message flags (is_plan, is_compression,
  is_summary, thinking); set_name store op; debug endpoints section
- api.md: full rewrite — add generate-name, planning, file download endpoints;
  all missing WS events; correct message field table with is_plan/is_compression
- tools.md: update user tools list with all current tools
- index.md: fix profiles list (smart_home → developer)
- CLAUDE.md: add Documentation section with table of all docs files
- NAVI.md: add architecture.md entry, improve websocket description

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Autonomous reasoning improvements: budget, anchoring, anti-stall, validation ...

- AgentProfile: per-profile thinking mechanics flags (think_enabled,
  iteration_budget_enabled, goal_anchoring, anti_stall, step_validation,
  planning_reflect, adaptive_replan) — all profiles updated in config.json
- Iteration budget: inject remaining iterations into context so model knows
  when to wrap up; urgency levels at ≤7 and ≤3 remaining
- Goal anchoring: inject original goal + todo state every N iterations to
  prevent drift on long tasks
- Anti-stall: two signals — no todo progress for N iterations, or identical
  tool calls repeated N times; warning injected into context
- Todo step validation: marking done requires a validation field describing
  how result was verified; failed gets a soft nudge with tip for re-planning
- stream_complete: add think param to base class, ollama and openai backends
- Summarizer: raise max_tokens 1024→3000, expand system prompt with
  user-preferences section and verbatim-value instructions
- Compression card: persist to session.messages (is_compression flag on
  Message), show expandable summary in webclient with markdown body
- ToolResult.to_message_content: always include output on failure so
  tracebacks and error details reach the model (fixes silent Error: None)
- Developer profile: fix subagent profile secretary→developer, add write_tool
  to subagent_tools, clarify write_tool vs filesystem in system prompt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Major feature batch: visibility, planning, file uploads, streaming ...

- stream_complete(): streaming with tools for all LLM turns — thinking
  now streams as ThinkingDelta/ThinkingEnd in real-time during tool-
  selection turns, not just on the final response
- todo built-in tool: session-scoped plan manager (set/view/update/clear);
  persona + all profiles updated with mandatory planning instructions
- TurnThinking event: sub-agent thinking forwarded to parent sink as a
  collapsible block in the spawn_agent card
- File uploads: non-image files uploaded via XHR, shown as badges in
  message bubble; SVG treated as regular file (not base64 image)
- session_files: POST /sessions/{id}/files, TTL cleanup, forbidden exts
- WebSocket reconnect: _AgentRun broadcast pattern, re-attach mid-stream
- UI: favicon, sidebar logo, turn-thinking cards, subagent thinking blocks,
  token counter, draft persistence, file progress bar
- Removed AgentNote (content is always None alongside tool_calls)
- Ollama stream_complete: tool_calls captured from non-final chunk (done=False)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Add project docs, tool manuals, and initial user tools ...

- CLAUDE.md: comprehensive project reference for Claude Code sessions
- manuals/write_tool.md: full format reference with working example
- tools/_template.py: canonical module-level tool format
- tools/enabled.json: auto-include list (get_current_datetime, user_notes)
- get_current_datetime, user_notes: first Navi-written tools

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>