profiles: restricted profiles for ordinary users, and a role gate that holds ...

`is_admin_only` was checked in one place out of nine and was not read from
config.json at all, so all seven profiles were reachable by every account with
role `user`. The flag now lives in config.json — the file is the baseline, a
`profile_overrides` row still wins on top of it — and one predicate,
`admin_only_blocked`, is the single place the rule is expressed. The nine
surfaces that list, switch to, spawn or resolve a profile all consult it:
`POST /sessions`, the WebSocket, switch_profile, list_profiles, the system
prompt's "Available profiles" block, spawn_agent and the Synapse reaction
runner. The prompt cache is now keyed by (profile, role), so a user's prompt
can never be served an admin's profile list.

The seven existing profiles (developer, discuss, dispatcher, modeler_3d,
navi_code, secretary, server_admin) are marked admin-only. Three new ones take
their place for ordinary users: assistant, designer_3d and coder. They share one
native tool set — ssh_exec, peer, reload_tools, create_mcp_server, test_mcp_tool,
image_view and gmail are withheld — and differ only in system prompt, model and
MCP groups. navi-web's raw `request` group, and the whole of gnexus-creds and
tgclient, are withheld too.

MCP per-user keys gain the missing half of the rule: a server that declares a
`user_key` slot is refused to anyone but an admin who has no personal key, and
is left out of their tool list entirely, instead of quietly falling back to the
owner's credential and appearing as a tool that cannot work. The refusal names
the server and points at Settings.

Also closes `GET /agents/prompts`, which served every profile's system prompt to
anyone, with no user dependency at all.

The accepted residual risk is written down in docs/profiles.md: the working
directory is a convention, not a sandbox.

tools: list_tools defaults to the profile the run executes as ...

Asking "what tools do I have?" required the agent to know its own profile id
— and to be right about it after a switch_profile had moved the session. The
run knows: run_stream now publishes the active profile id (re-published when
switch_profile reloads the run) alongside the model, SubAgentRunner publishes
its own rather than inheriting the parent's, and ToolContext carries it into
every execute() call.

list_tools reads that when profile_id is omitted, so the bare call answers the
question, and it says which profile it assumed ("current profile") so the
answer cannot be mistaken for another profile's.

scope='agent'|'subagent' selects which of the profile's two toolsets to list —
the set spawn_agent would hand a sub-agent running that profile, which is a
different list and until now had no way to be inspected.

Item D of the list_tools plan, kept separate from the accuracy/compactness work.

planning: replace the mandatory pre-turn gate with an agent-invoked plan tool ...

- Phase 2 (critique) retired; observe/MODE and the top-level DIRECT shortcut
  removed (sub-agents keep DIRECT for trivial subtasks)
- replan merged into plan: `reason` (+ updated_goal) packs the re-plan
  context, without a reason it is fresh planning
- both phases call the LLM with think=False — cloud reasoning models leak
  their chain-of-thought into structured output on non-streaming calls —
  and strip the gemma "thought<channel|>" content artifact
- Phase 1 conversation windowed to ~20k chars, newest-first with the
  original task pinned (28.7k-token prompts came back as 1-token output)
- confirmation by COMPLEXITY: the tool result tells the agent to present
  complex plans and wait; sub-agents keep the execute-now injection
- PlanningStatus/PlanReady reach the UI mid-turn via current_event_sink
  (ctx.event_sink is None in the agent loop — events silently never
  reached the WS before)
- agent gate, casual-message detector and adaptive re-plan nudges removed;
  anti_stall keeps only stall detection

replan: integrated mid-task re-planning tool ...

Add a replan tool that re-runs the planner over the live session context
+ todo + scratchpad when the plan's structure is stale due to discoveries
(NOT failed steps -- that stays [Adaptive re-plan]). Integrated approach:
PlanningEngine.run gains is_replan/replan_context (suppresses DIRECT
shortcut and observe-skip, frames Phase 1 as a revision); ReplanRunner
packs reason/goal/todo/findings/errors and captures PlanReady; the tool
is exposed to navi_code/developer/tool_developer via a
current_replan_runner ContextVar set per-iteration in run_stream (correct
after switch_profile). New plan replaces the todo. Lazy events import
breaks the navi.tools -> navi.core -> navi.tools cycle.

Isolate sub-agent todo + render live todo in TUI side panel ...

Phase 1 — sub-agent todo isolation (backend):
- Add current_todo_session_id ContextVar; subagent_runner scopes it to the
  sub-agent's ephemeral run id so its auto-populated plan and todo updates
  land in an isolated KV row instead of clobbering the parent session's todo
  (which the parent's goal-anchoring reads every iteration).
- todo._sid() and planning.set_tasks prefer current_todo_session_id; the
  parent run leaves it unset, so all existing todo consumers (anti-stall,
  goal anchor, get_progress_message) behave exactly as before.

Phase 2 — live todo in the TUI right column:
- TodoUpdated event + emit it from the agent loop after planning auto-populate
  and after each tool-execution turn.
- GET /sessions/{id}/todos reads the parent session's todo KV row (explicit
  user_id/session_id, optional injected kv).
- api.get_todos + TodoList/TodoPanel widgets: status-coloured markers
  (pending dim, in_progress accent+bold, done success, failed error, skipped
  dim), progress header, scrollable panel below the auto-height info block.
- Hybrid delivery: REST seeds the panel on attach/switch, todo_updated WS
  events update it live.

Sub-agent todos as nested sub-lists is deferred to a later phase.

Co-Authored-By: Claude <noreply@anthropic.com>

Navi Code: stop via Esc + project cwd propagation ...

- TUI: Esc stops active stream cooperatively via POST /sessions/{id}/stop
- TUI: render stream_stopped as status message
- CLI/WebSocket: send shell cwd in client->server message field
- Orchestrator stores cwd in session.session_metadata
- ContextBuilder injects [Working directory] into LLM context
- Agent sets current_working_directory ContextVar per turn
- tools/base: ToolContext gains cwd field
- filesystem/terminal/code_exec resolve relative paths against session cwd
- Add bin/navi-code wrapper for PATH symlink; document in README.md
- Update docs/websocket.md and tests

Full pytest: 544 passed, 1 skipped.

Co-Authored-By: Claude <noreply@anthropic.com>

Pass explicit ToolContext to tools instead of hidden ContextVars ...

Add ToolContext dataclass (session_id, event_sink, stop_event, model,
user_id, user_role, user_info) and thread it through the execution chain:
Agent._execute_tools_with_sink → ToolExecutor → tool.execute().

All ~25 tools updated to accept ctx parameter. Tools that previously
read ContextVar now prefer ctx when provided, falling back to
ContextVar for backward compatibility.

Tests updated to pass ToolContext explicitly — no more test fixtures
that set current_session_id / current_user_id ContextVars.

ContextVar setters remain as fallback for non-tool consumers
(ai_helper, context_builder, planning) and will be removed in a
follow-up refactor.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Refactor: move tool helper modules into _internal subpackage ...

Moves non-tool infrastructure out of navi/tools/ root so that only
actual tool classes live there:

  base.py           → _internal/base.py
  loader.py         → _internal/loader.py
  middleware.py     → _internal/middleware.py
  logging_middleware.py → _internal/logging_middleware.py
  _time_parser.py   → _internal/time_parser.py

All imports updated across core/, api/, mcp/, tools/, and tests/.
No proxy files remain in navi/tools/ root.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>