Add deterministic line-based file editing (edit_lines), rating UI fix, and session refresh ...

- filesystem.py: add edit_lines action (deterministic line ops via operations array)
           + numbered param for read (1-based line numbers in output)
           + clarify four editing modes in tool description
- chat.js: fix rating IDs for streaming messages (assign h_ ID on stream_end)
- SessionList.vue: mobile pull-to-refresh with PTR_THRESHOLD=80
- AppSidebar.vue: desktop refresh button next to Conversations header
- planning.py: knowledge source assessment in Phase 1
- debug panel: MCP servers tab + resolved tools per profile
- NAVI.md: reposition as neutral quick-reference

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Refactor MCP integration: server groups in profiles ...

- mcp_servers.json: add 'groups' (read/write/admin) for gnexus-book
- AgentProfile: new 'mcp_servers' field (server_name -> group list)
- Profile loader: parse and persist 'mcp_servers' in config.json
- Agent._tool_list(): expands mcp_servers into concrete tool names
  via McpManager.resolve_group(), wildcard '*' supported
- /agents/profiles API: includes 'mcp_servers' in response
- Profiles no longer list individual mcp_ tools in 'enabled_tools'
- discuss: gnexus-book read group
- server_admin: gnexus-book read+write+admin groups

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Multi-user auth via gnexus-auth OAuth + hybrid role/permission model ...

- Integrate gnexus-auth-client-py (GAuthClient) for OAuth flow, token refresh,
  and webhook parsing
- Add navi/auth/ package: User model, Fernet encryptor, client singleton,
  deps (get_current_user, require_admin, require_permission)
- New tables: navi_users, user_auth_sessions (auto-created on startup)
- Session/memory isolation by user_id with legacy NULL support
- Cookie-based auth proxy: /auth/login, /callback, /logout, /me
- Webhook receiver /webhooks/gnexus-auth handling user events, global logout,
  session revocation, role/permission changes
- Admin endpoints (/admin/*) gated by role + permissions
- Webclient auth store with isAdmin/hasPermission guards
- Admin-only profile filtering in /agents/profiles
- 200/200 tests passing

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Disable thinking stalls for 3D subagents

Improve 3D modeling validation prompts

Add Prompts and Tools tabs to debug page ...

Backend:
- GET /agents/prompts — returns full built system prompt for every
  profile, broken into sections (persona / profile / profiles block)
  with char/token counts; mirrors Agent._build_system_prompt() exactly
- GET /agents/tools — now includes parameters schema alongside name
  and description

Debug page:
- Tab bar: Context / Prompts / Tools
- Prompts tab: profile sidebar + collapsible sections per prompt part
  (persona, profile prompt, profiles block), togglable tools list
- Tools tab: searchable list of all tools with description and
  parameter table (name, type, description, required marker)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Initial implementation of the agent system core ...

- FastAPI server with REST API and WebSocket streaming
- Modular LLM backend abstraction (Ollama implemented, OpenAI stub)
- Tool system: web_search (ddgs), filesystem, http_request, code_exec, terminal
- Agent profiles: smart_home, server_admin, secretary
- Tool-calling loop with concurrent tool execution
- In-memory session store with SessionStore ABC for future persistence
- Registry pattern for tools, profiles, and backends
- Orchestrator stub as foundation for multi-agent scenarios