Add persistent multi-session terminal tool with background support ...

- New TerminalManager module: named subprocess sessions per Navi session,
  background readers, event-sink streaming, idle auto-cleanup
- Refactor terminal tool to multi-action: run, open, close, list,
  status, send_input
- Add TerminalOutputDelta and TerminalClosed events for streaming
- Wire TerminalManager into AppContainer, orchestrator, and registry
- Persist session_metadata in Session model and pg_session_store
- Close all session terminals on session delete
- Webclient: handle terminal_output/terminal_closed WS events,
  display live terminal output in tool cards
- Update unit tests for new terminal actions

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Add archive message pagination, configurable WS replay buffer ...

Backend:
- Add archive_threshold to Session model and getSession response
- Add next_before_seq to archive endpoint for cursor pagination
- Make WS replay buffer size configurable via WS_REPLAY_BUFFER_SIZE

Webclient:
- Add getArchivedMessages API function
- Add archive pagination state and loadArchivedMessages to chat store
- MessageList: auto-load older messages on scroll-to-top with scroll
  position preservation and loading spinner

Docs: update config.md with new env vars

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Add session message archive table + global sequence_number tracking ...

Schema:
- session_messages_archive — identical structure, stores old messages.
- sessions.next_sequence    — monotonic seq counter per session.
- sessions.archive_threshold — split point between hot and archive.

Behaviour:
- get() / _build_sessions() load only seq >= archive_threshold (hot).
- save() UPDATEs existing rows (seq >= 0) and INSERTs new ones (seq = -1)
  with auto-assigned sequence_number = next_sequence, next_sequence+1, ...
- archive_old_messages() moves a batch to archive and bumps the threshold.

This keeps the hot table bounded so list/get RAM stays flat regardless
of total session history size.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Implement delta-save for session messages ...

Replace full DELETE/INSERT with efficient delta writes:
- Track db_message_count on Session (how many rows already persisted).
- On save(): UPDATE mutable flags for existing rows, DELETE only extras
  (race guard), INSERT new messages via executemany.
- Reduces DB write amplification from O(N) to O(delta) per turn.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Review fixes: restore _build_sessions, fix flags, search filter, tests ...

- Restored _load_messages_map and _build_sessions helpers that were
  accidentally dropped in Phase 5 (list_all/list_page/search_list
  called them but they were missing, causing NameError at runtime)
- _build_sessions now filters messages by is_display so list methods
  return consistent display-only history like get()
- count_all/search_list EXISTS subquery now filters to is_display=true
  so search only matches visible chat messages
- Updated pg_session_store docstring to remove stale dual-write claim
- compressor summary_msg now defaults to is_display=False
- Added unit tests for message flags (agent, compressor, planning)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Phase 5: Cleanup legacy JSON dual-write, remove duplicated class ...

- Removed JSON column writes from create() and save()
- Removed duplicated PgSessionStore class block that leaked in during Phase 4
- _serialize/_deserialize retained for boot migration helper only
- All session I/O now goes exclusively through session_messages table

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Phase 4: Read list/search from session_messages, drop JSON fallback ...

- list_all / list_page / search_list now load messages via _build_sessions()
  which batch-loads session_messages in a single query
- count_all search uses EXISTS (SELECT 1 FROM session_messages ...) instead
  of ILIKE on the JSON text column
- Removed _row_to_session and all legacy JSON column reads from list paths
- get() continues to load session_messages directly (Phase 3)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Phase 3: Build context from session_messages table ...

- get() always reads from session_messages, never falls back to JSON columns
- Load all rows in a single query, then split by is_display / is_context flags
- messages[] and context[] now share the same Python objects,
  enabling reliable id() matching in the agent compression path

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Phase 2: Dual-write with is_context/is_display flags on Message ...

- Message model gets is_context and is_display bools
- PgSessionStore.save() writes flags directly to session_messages
- Agent sets is_context=False on display-only messages, is_display=False on context-only
- Planning: plan context msg is_display=False, plan marker is_context=False
- Compression: summarized messages get is_context=False, summary added to messages with is_display=False
- Tests updated for extra user display+context messages per turn

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Extract single shared Database pool, eliminate 4 duplicated pool creations ...

- Create navi/db.py::Database managing one asyncpg pool
- KvStore, PgSessionStore, MemoryStore, RecallScheduler now accept pool in constructor
- AppContainer holds Database, shutdown closes one pool instead of 4
- create_container creates one pool and passes it to all stores
- All tests updated to set _initialized=True on fakes to skip DDL

392 passed, 1 skipped

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Add session search across messages with backend + frontend ...

Backend:
- GET /sessions now accepts `search` query param
- _session_summary computes match_indices and match_preview from messages
- pg_session_store: messages ILIKE added to search_list and count_all
- In-memory store: search_list also filters by message content

Frontend:
- AppSidebar: search toggle icon + debounced input, Ctrl+K shortcut
- SessionItem: highlight matching text, show match_preview from search
- SessionList: pass searchQuery to SessionItem
- SessionsStore: searchQuery/searchActive state, setSearch/clearSearch
- API layer: getSessions accepts search param
- MessageList: scroll to target message + brightness flash animation
- ChatStore: loadSession accepts targetMessageIndex, scrollToMessageIndex ref
- CSS: msg-flash keyframe animation in app.scss
- Tests updated for new getSessions signature

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Add pagination, search, and sorting to admin sessions ...

Backend:
- Add count_all and search_list abstract methods to SessionStore
- Implement count_all and search_list in PgSessionStore (SQL with ILIKE)
- Implement count_all and search_list in InMemorySessionStore
- Update /admin/sessions to accept limit, offset, search, sort_by, sort_order
- Return {total, limit, offset, items} from /admin/sessions

Frontend:
- Add search input for sessions in admin panel
- Add clickable sortable column headers with asc/desc toggle
- Add pagination controls (prev/next, page size selector, item count)
- Debounce search input (300ms)

Tests:
- Add integration tests for pagination, offset, search, and sorting
- All 217 tests pass

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Fix legacy session visibility and add WebSocket auth debug logging ...

- pg_session_store: remove OR user_id IS NULL from list_all/list_page
  so legacy sessions are no longer visible to all users
- auth/deps.py: add debug logging at every step of _resolve_user
- websocket.py: add debug logging at every stage of websocket_session

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Multi-user auth via gnexus-auth OAuth + hybrid role/permission model ...

- Integrate gnexus-auth-client-py (GAuthClient) for OAuth flow, token refresh,
  and webhook parsing
- Add navi/auth/ package: User model, Fernet encryptor, client singleton,
  deps (get_current_user, require_admin, require_permission)
- New tables: navi_users, user_auth_sessions (auto-created on startup)
- Session/memory isolation by user_id with legacy NULL support
- Cookie-based auth proxy: /auth/login, /callback, /logout, /me
- Webhook receiver /webhooks/gnexus-auth handling user events, global logout,
  session revocation, role/permission changes
- Admin endpoints (/admin/*) gated by role + permissions
- Webclient auth store with isAdmin/hasPermission guards
- Admin-only profile filtering in /agents/profiles
- 200/200 tests passing

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

Paginate session list loading

Planning debug panel, todo auto-populate, scratchpad/persona improvements ...

- Planning debug panel: new Planning tab in debug/index.html shows raw
  phase 1/2 outputs and token counts per planning run, stored in
  session.planning_logs (new column in both SQLite and PostgreSQL)
- New GET /sessions/{id}/planning API endpoint
- PlanningDebugData internal event wires _run_planning() output into
  session storage; never forwarded to WebSocket clients
- Phase 3 (plan critic) disabled — to be reworked with reflect integration
- Todo tool: auto-populated from plan steps after phase 2; model only
  needs to call update/view, not set
- Scratchpad: clarified description and persona instructions; removed
  context_transfer from user-facing docs (internal mechanism only)
- web_search: switched to ddgs package, SearXNG as primary backend,
  DDG html-only fallback; added find_up action to filesystem tool
- Persona: added SCRATCHPAD and TODO sections with clear usage rules;
  added NAVI.md project context instructions
- chat.js: fixed subagent planning event fallthrough into parent UI;
  statusLabel cleared on first stream delta

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Add session name generation via LLM ...

Backend:
- Session model gets name: str | None field
- SQLite migration: ADD COLUMN name TEXT
- PostgreSQL: ADD COLUMN IF NOT EXISTS name TEXT (applied on pool init)
- SessionStore: add set_name() abstract method, implemented in all stores
- navi/core/name_generator.py: LLM worker that reads user messages and
  returns a 3–6 word title or None if content isn't substantial yet
- POST /sessions/{id}/generate-name endpoint: fires LLM, saves and
  returns name; skips if session already named or has no user messages
- GET /sessions and GET /sessions/{id} now include name field

Client:
- api.generateSessionName(id) — calls the new endpoint
- sessions store: updateName(id, name) mutation
- chat store: after stream_end, _tryGenerateName() runs fire-and-forget;
  skips silently if session already has a name or if request fails
- SessionItem already displays session.name (falls back to id prefix)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Migrate storage to PostgreSQL with SQLite fallback; misc fixes ...

- Add PgSessionStore (asyncpg pool) and PgMemoryStore replacing aiosqlite
- Keep SqliteSessionStore + SqliteMemoryStore for zero-dependency quick start
- Selection logic in deps.py: DATABASE_URL set → PG, else → SQLite
- Add asyncpg>=0.29 to dependencies; add DATABASE_URL / DB_PATH to config
- Add RESPONSE HYGIENE rule to persona: never echo tool output or plan state
- Add developer profile user tools: weather, internal_monitor
- Update README: developer profile, DB section, current tool/profile state

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>